Exploitation of databases in polar research - Data evaluation and outputs

Vol.5,No.2(2015)

Abstract

The increasing number of observations and floristic sample analyses provided by the Centre for Polar Ecology, Faculty of Science, University of South Bohemia in České Budějovice, Czech Republic (CPE), led to development of the sample database (SampleDTB). At present, the Sample DTB contains records on total of 318 samples from 135 sites. Total of 254 taxa at level of genera or species were observed. For database functionality tests, two datasets were selected. The first one consisted of samples collected by ALGO groups in frame of Polar Ecology course organized by the CPE in 2011-2014 (ALGO dataset). The second one consisted of samples collected in Bulgaria in 2013 (BG dataset). The ALGO dataset contains records on total of 188 samples from 94 sites. Total of 216 taxa (genera or species) were observed. The majority of habitats sampled were streams and the most frequently sampled communities were layer-forming communities like periphyton, epilithon and biofilms. The most dominant classes observed in ALGO dataset were diatoms and cyanobacteria. The unconstrained canonical analysisrevealed that the environment type significantly affected the taxonomical composition observed. In the BG dataset, 16 samples from 4 sites were recorded. Total of 40 taxa (genera or species) were observed. Majority of habitats sampled included streams and shallow pools and the communities sampled were restricted to periphyton, epiphyton and epilithon. Similarly to ALGO dataset, the most dominant classes in BG dataset were Cyanophyceae and diatoms. Due to low number of samples, no multivariate analysis was performed in the BG dataset. These exports and further analyses proved functionality of the SampleDTB database.


Keywords:
database; data utilisation; species diversity; ecology
References

Elster, J. (1999): Algal versatility in various extreme environments. In: J. Seckbach (eds.): Enigmatic microorganisms and life in extreme environments. Kluwer Academic Publishers, pp. 215-227.

Elster, J. (2002): Ecological classification of terrestrial algal communities in polar environments. In: L. Beyer, M. Bötler (eds.): Geoecology of Antarctic ice-free coastal lanscapes. Springer-Verlag, pp. 303-326.

Ettl, H., Gärtner, G. (2014): Syllabus der Boden-, Luft- und Flechtenalgen. Springer, Berlin Heidelberg, 773 p.

Jones, M. B., Schildhauer, M. P., Reichman, O. J. and Bowers, S. (2006): The new bioinformatics: integrating ecological data from the gene to the biosphere. Annual Review of Ecology, Evolution, and Systematics, 37: 519-544.

Khalsa, S. J. S., Yarmey, L. (2014): Data management challenges in polar ecology. In: J. Kavan, A. Bernardová (eds.): Polar Ecology Conference 2014. Faculty of Science, University of South Bohemia in České Budějovice, České Budějovice, 70 p.

Kim, G. H., Klochkova, T. A. and Kang, S. H. (2008): Notes on freshwater and terrestrial algae from Ny-lesund, Svalbard (high Arctic sea area). Journal of Environmental Biology, 29: 485-491.

Komárek, J., Anagnostidis, K. (1999): Süßwasserflora von Mitteleuropa 19/1. Cyanoprokaryota. 1.Teil: Chroococcales. Gustav Fischer Verlag, Jena, 548 p.

Komárek, J., Anagnostidis, K. (2005): Süßwasserflora von Mitteleuropa 19/2. Cyanoprokaryota. 2.Teil: Oscillatoriales. Elsevier/Spektrum, Heidelberg, 759 p.

Komárek, J. (2010): Recent changes (2008) in cyanobacteria taxonomy based on a combination of molecular background with phenotype and ecological consequences (genus and species concept). Hydrobiologia, 639: 245-259.

Komárek, J., Kováčik, L., Elster, J. and Komárek, O. (2012): Cyanobacterial diversity of Petuniabukta, Billefjorden, central Spitzbergen. Polish Polar Research, 33: 347-368.

Komárek, J. (2013): Süßwasserflora von Mitteleuropa 19/3. Cyanoprokaryota. 3.Teil: Heterocytous genera. Springer, Heildelberg, 1131 p.

Kvíderová, J., Lukavský, J. (2005): The comparison of ecological characteristics of Stichococcus (Chlorophyta) strains isolated from polar and temperate regions. Algological Studies, 118: 127-140.

Kvíderová, J. (2011): Biofilm. In: M. Gargaud, R. Amils, J. C. Quintanilla, H. J. Cleaves II, W. M. Irwine, D. L. Pinti and M. Viso (eds.): Encyclopedia of astrobiology. Springer, Berlin Heildelberg, pp. 170-171.

Kvíderová, J. (2012): Research on cryosestic communities in Svalbard: the snow algae of temporary snowfields in Petuniabukta, Central Svalbard. Czech Polar Reports, 2: 8-19.

Kvíderová, J., Elster, J. (2013): Standardized algal growth potential and/or algal primary production rates of maritime Antarctic stream waters (King George Island, South Shetlands). Polar Research, 32: 17.

Kvíderová, J. (2014): Sample database of the Centre for Polar Ecology - Database design and data management. Czech Polar Reports, 4: 140-148.

Lesniak, V. (2012): Diversity and ecophysiological performance of cyanobacteria in wet meadow, Petunia Bay, Central Svalbard, Universite Blaise Pascal, Clermont-Ferrand, 39 p.

Matula, J., Pietryka, M., Richter, D. and Wojtun, B. (2007): Cyanoprokaryota and algae of Arctic terrestrial ecosystems in the Horsund area, Spitzbergen. Polish Polar Research, 28: 283-315.

Pinseel, E., Kopalová, K., Van den Vijver, B. and Lange-Bertalot, H. (2014): Freshwater diatoms of Petunia Bay (Spitzbergen). Universiteit Antwerpen, Botanical Garden Meise, University of South Bohemia, Antwerpen, Meise, České Budějovice, 98 p.

Skulberg, O. M. (1996): Terrestrial and limnic algae and cyanobacteria. In: A. Elvebakk, P. Prestrud (eds.): A Catalogue of Svalbard Plants, Fungi, Algae and Cyanobacteria. Norsk Polarinstitutt Skrifter, pp. 383-395.

Sládeček, V., Sládečková, A. (1996): Atlas vodních organismů se zřetelem na vodárenství, povrchové vody a čistírny odpadních vod. 1. díl: Destruenti a producenti. [Atlas of aquatic organisms with respect to water supply, surface waters and wastewater treatment plants. Part 1. Decomposers and producers]. Agrospoj, Praha, 350 p.

Ter Braak, C. J. F., Šmilauer, P. (2012): Canoco reference manual and user's guide: software for ordination, version 5.0. Microcomputer Power, Ithaca, USA, 496 p.

Web sources / Other sources

Report on Polar Ecology course Svalbard 2011. Centre for Polar Ecology, Faculty of Science, University of South Bohemia, České Budějovice, 20 p. http://polar.prf.jcu.cz/data/polar%20ecology.pdf

Report on Polar Ecology course Svalbard 2012. Centre for Polar Ecology, Faculty of Science, University of South Bohemia, České Budějovice, 28 p. http://polar.prf.jcu.cz/data/polar_ecology_course_report_2012.pdf

Report on Polar Ecology course Svalbard 2013. Centre for Polar Ecology, Faculty of Science, University of South Bohemia, České Budějovice, 31 p. http://polar.prf.jcu.cz/data/Polar_ecology_course_2013.pdf

Report on Polar Ecology course 2014. Centre for Polar Ecology, Faculty of Science, University of South Bohemia, České Budějovice, 26p. http://polar.prf.jcu.cz/data/PolarEKO2014/ReportTeaching2014final.pdf

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